ArchiMed LIS · Digital pathology
From specimen intake to a signed report
A laboratory information system for pathology departments. Study log, slide barcoding, a digital WSI viewer, telepathology and storage of whole-slide images in DICOM format — on a single platform.
MODULE · LABORATORY
Laboratory
Study log for lab technicians: specimen intake, barcoding, tissue processing, staining, step tracking.
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MODULE · DIAGNOSTICS
Diagnostics
Pathologist workstation: WSI viewer, annotations, disease-specific report templates, electronic signature.
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ARCHIVE · TELEPATHOLOGY
WSI archive
Long-term storage of whole-slide images in DICOM, remote consultations and second opinions between healthcare facilities.
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Module 01 · Laboratory
A study log from receipt to release
The lab technician receives the container, prints barcodes for cassettes and slides, fills in the study record and takes the study through each step — tissue processing, embedding, microtomy, staining, scanning. Every step is logged automatically, so nothing gets lost.
- Specimen intake and barcodes. Label printing for cassettes and slides, linked to the patient, the container and the referral from the HIS.
- Step tracking. Grossing, tissue processing, paraffin embedding, microtomy, H&E / IHC staining — every step with a timestamp and the person responsible.
- Data exchange with lab equipment. Direct connection to tissue processors, embedding stations, automated stainers and WSI scanners.
- Orders for additional slides. The pathologist requests additional IHC staining or a recut in one click — the request goes straight to the lab technician’s log.
- Shift analytics. Turnaround time, bottlenecks by step, equipment load, reports on volumes and turnaround times.
Lab log · 2026-05-02
STAINING
PROCESSING
ADD-ON
SCANNING
MICROTOMY
Containers this shift
23 received · 14 processing · 9 staining · 6 ready
Ivanov I. I. · gastric biopsy
Petrova A. S. · thyroid surgical specimen
Sidorov K. M. · prostate core biopsy
Kuznetsova E. V. · breast core biopsy
Morozov D. A. · colon polyp
Gastric biopsy · H&E
Ivanov I. I. · K-260502-1842 · slide 2/4 · ×40
Pan
Zoom
Length
ROI
Annot
Bookmark
Compare
AI
Module 02 · Diagnostics
A workstation for the pathologist
Pathologists see their own pool of cases, open a slide scan right in the browser, move between magnifications without reloading, measure, annotate and compare H&E with IHC. The report is written from a template, with the patient details section filled in automatically — then it is signed under Federal Law No. 63-FZ “On Electronic Signature” and sent to the HIS.
- WSI viewer. Smooth zoom from overview to ×40 without lag, multi-slide comparison, synchronized navigation across parallel stains.
- Annotations and measurements. Ruler, angle, ROI, area, object counting — bookmarks are saved in the case together with their coordinates.
- Disease-specific report templates. Structured reports for oncology, gynecology, urology, the GI tract and skin — with auto-fill and stage calculation.
- Qualified electronic signature (QES) and second opinion. Electronic signature under 63-FZ, routing for verification, a log of revisions and approvals.
- AI assistant. Mitosis highlighting, Ki-67 scoring, structure segmentation — modules can be connected via API.
Module 03 · WSI archive · Telepathology
Whole-slide images in DICOM — for years
A single slide scan takes up tens of gigabytes. The ArchiMed archive stores scans in DICOM format with pyramidal tile-based retrieval, replicates them to a cold site and serves them to any healthcare facility in the region for remote consultation. No vendor lock-in — standard formats and protocols.
- DICOM Whole Slide Imaging. Storage under the Supplement 145 standard; import of SVS, NDPI, MRXS, VMS, TIFF, BIF — all the major WSI scanners.
- Telepathology. Request a second opinion from an expert at another healthcare facility — they open the same scan and the same case, with no file copying.
- Hierarchical storage. Hot scans on SSD, cold archive on disk arrays with deduplication.
- Personal data security. Storage-level encryption, de-identification for AI model training, access auditing, FSTEC certificate (Federal Service for Technical and Export Control of Russia).
- Integration with EGISZ (Unified State Health Information System of Russia). Export of electronic medical documents (EMD) with histology reports, exchange with regional radiology information systems (RRIS) and Central Medical Image Archives (CMIA).
Pathologist’s cases · 2026-05-02
WSI
IN PROGRESS
WSI
SIGNED
WSI
2ND OPINION
IHC
NEW
WSI
NEW
Study list
11 this shift · 4 in progress · 5 signed · 2 in consultation
Ivanov I. I.
Petrova A. S.
Sidorov K. M.
Kuznetsova E. V.
Morozov D. A.
End-to-end workflow
One pipeline from container to signature
Everything the lab does with the specimen and everything the pathologist does with the image — in one system with a shared barcode.
STEP 01
Intake
A container from the operating room — referral from the HIS, barcode printing, study record.
STEP 02
Processing
Grossing, dehydration, paraffin embedding — status and timestamps for every cassette.
STEP 03
Staining
Microtomy, H&E, IHC, special stains — requests between the pathologist and the lab technician.
STEP 04
Scanning
The WSI scanner uploads the scan straight to the DICOM archive — the case is ready for reporting.
STEP 05
Report
Template-based reporting, annotations, QES, delivery to the HIS and the patient portal.
Technical specifications
What’s included in ArchiMed LIS
Key features from the software’s technical specifications: workstations, specimen tracking, reporting and the viewer.
Workstations
A dedicated desktop for every role
- Desktops for the pathologist and the lab technician
- Quick filters: period, status, assignee, lab step
- Search by study, cassette and slide number, by patient and physician name
- Interface in Russian and English, browser-based
Specimen tracking
Every step under control
- Registration, grossing, processing and embedding, microtomy, staining, scanning, archiving
- The set of steps is configured in the administrator web interface
- Roles: medical registrar, pathologist, lab technician, department head
- Referrals are entered manually or received from the integrated HIS
Barcodes
Automatic image linking
- Barcode generation and printing for cassettes and slides
- Recognition of the 2D barcode on the scan and automatic linking to the study
- Unrecognized images screen: viewing of microscopy slides and gross specimen labels, bulk linking
Report
Template-based reporting
- Gross and microscopic description, conclusion, ICD-10 and ICD-O codes, recommendations, specimen details
- Auto-fill of descriptions and the conclusion from templates, study complexity categories
- Print form tailored to the healthcare organization’s requirements, preview, electronic signature
- Voice assistant inside the LIS: terms, numbers, units of measurement, ranges
Patient · data exchange
A single database and external systems
- Patient record: full name, sex, date of birth, SNILS (Russian individual insurance account number), compulsory health insurance (OMS) policy, INN (taxpayer ID), address, HIS chart number
- A single database of patients, studies, reports and images
- “Share study” — a link sent by e-mail, with personal data anonymized
- API for data exchange with external systems, access rights by role and user account
Viewer
Digital slides in the browser
- Digital pathology formats from different vendors: TIFF, NDPI, SVS
- Mini-map, zoom, rotation and flipping, brightness and contrast
- Annotation tools, JPG screenshots
- Opens directly from the study report
Digital microscopy modules
Advanced work with whole-slide images: from intake from the scanner to morphometry and collaborative case review.
Medical device registration with Roszdravnadzor (Russia’s healthcare regulator) in progress for these modules
Scanner intake
Slide routing
- Automatic intake of images from scanning equipment
- Conversion of scanner formats to a single multi-resolution format
- Reading of the barcode and QR code on the label, automatic case creation with a cross-check against the LIS
- Queue of unrecognized images; “Inbox”, “My cases” and “Archive” folders
Navigation
Slide examination
- Case preview by study type, block number and stain
- Magnification presets, rotation to any angle, slide info card
- Examination completeness control: viewed fields are shaded on the mini-map
- Field-of-view snapshot with annotations, ruler and label
Fluorescence
Multichannel slides
- Brightfield and fluorescence modes
- Channel toggling, pseudocolor, blending with transparency
- Separate brightness window for each channel
Morphometry
Annotation and measurements
- Ruler, point, rectangle, circle, polygon, freehand drawing; area and perimeter
- Annotation classes; union, subtraction and intersection of regions
- Saving annotations to a DICOM Structured Report and loading them back
Counting · IHC
Cells, mitoses, staining
- Cell and mitosis counts in a hot spot, density per mm²
- Color deconvolution of the stain, percentage of positive pixels
- Intensity classes and H-score calculation, with thresholds recorded in the report
Comparison · case conference
Collaborative review
- Up to four slides at once, alignment of serial sections, synchronized navigation
- Conference mode: participants see the presenter’s navigation and annotations
- Chat linked to a region and magnification, anonymized case access
Support for all WSI scanners
Import of native digital scanner formats and normalization to DICOM Whole Slide Imaging — independent of the equipment vendor.
DICOM WSI
SVS · Aperio
NDPI · Hamamatsu
MRXS · 3DHistech
SCN · Leica
VMS · Hamamatsu
BIF · Roche / Ventana
VSI · Olympus
TIFF / BigTIFF
JPEG 2000
HIS · Lab equipment
We integrate with your ecosystem
Ready-made connectors to Russian HIS products and standard interfaces — DICOM, HL7 v2, FHIR. Direct data exchange with lab tissue processors, automated stainers and WSI scanners.
MedialogHIS
MedworkHIS
qMSHIS
1C:MedicineHIS
EMIASMoscow’s unified HIS
EGISZEMD, integrated EMR (IEMK)
Leica · Sakura · Tissue-Tektissue processors
Ventana · DakoIHC stainers
Hamamatsu · AperioWSI scanners
3DHistech · LeicaWSI scanners
HL7 v2 / FHIRstandards
DICOM Sup. 145WSI
Compliance with regulatory requirements
Roszdravnadzor registration certificate (Russian medical device registration), Unified Register of Russian Software, FSTEC certificate. Ready to process personal data in public institutions.
Register
Russian Software Register
Entry No. 22649 of 24 May 2024 · ARTVISION LLC
FSTEC
Certificate of conformity
personal data protection
Roszdravnadzor
Medical device registration
microscopy modules — registration in progress
Standards
DICOM WSI · HL7 · FHIR
Sup. 145 · IHE PaLM
20+
years in the medical
software market
software market
7+
WSI scanner formats
out of the box
out of the box
×40
smooth zoom up to
optical magnification
optical magnification
RU · EN
interface in Russian
and English
and English
До АрхиМед LIS у нас стёкла перемещались в коробках между корпусами. Теперь патолог в любой момент открывает скан 2018 года рядом со свежим — и сразу видит динамику.